SBOLDesigner

A Computational Workflow for the Automated Generation of Models of Genetic Designs

Computational models are essential to engineer predictable biological systems and to scale up this process for complex systems. Computational modeling often requires expert knowledge and data to build models. Clearly, manual creation of models is not …

Specifying Combinatorial Designs with the Synthetic Biology Open Language (SBOL)

As improvements in DNA synthesis technology and assembly methods make combinatorial assembly of genetic constructs increasingly accessible, methods for representing genetic constructs likewise need to improve to handle the exponential growth of …

SBOLDesigner: A Hierarchical Genetic Design Editor

Synthetic biology, as a field of research, applies electrical engineering, systems biology, and bioinformatics to genetic circuit design. Software tools are leveraged to provide rapid iteration through the design space, and data standards are used to …

SBOLDesigner 2: An Intuitive Tool for Structural Genetic Design

As the Synthetic Biology Open Language (SBOL) data and visual standards gain acceptance for describing genetic designs in a detailed and reproducible way, there is an increasing need for an intuitive sequence editor tool that biologists can use that …